Practical X-ray course on methods in protein crystallography: data collection, 
data processing, and phasing

(May 18 till May 22, Oulu, Finland)



There will be an international X-ray course at the Faculty of Biochemistry and 
Molecular Medicine and the Biocenter Oulu, of the University of Oulu, Oulu, 
Finland. The course will focus on data collection and data processing using 
iMOSFLM and XDS, to be complemented by lectures and tutorials on experimental 
phasing (SHELX) and molecular replacement phasing (CCP4). In addition there 
will be lectures on new techniques (XFEL diffraction and neutron 
crystallography). On the last day of the course there will be a remote data 
collection demonstration at Diamond Light Source, Oxford. The outline of the 
course follows the previous format, aiming for approximately 20 students, who 
will be provided with a computer in our linux class room.  Data collection from 
own crystals will be possible using our in-house Bruker microfocus X-ray 
generator or remotely at Diamond.

Throughout the course students will have time to work on their own topics in 
the linux class room and we will also provide the opportunity to practice with 
cryocooling of own crystals and collect data with our in-house equipment. 
Crystals that should be used for data collection in house or at Diamond should 
be available for freezing on the first day of the course or should be sent in 
advance to Oulu.



The accommodation for non-local students will be arranged by the local 
organisers. Please contact Lari Lehti? (lari.lehtio (at) oulu.fi) or Kristian 
Koski (kristian.koski (at) oulu.fi) for further information regarding the 
course. When applying to attend this course follow the instructions below.


Website for the course: <http://www.oulu.fi/biocenter/instruct-nac/courses> 
http://www.oulu.fi/biocenter/instruct-nac/courses



Current course outline:

Monday, May 18:
Basic concepts of biomolecular crystallography, by Bernhard Rupp (Insbruck, 
Austria and Vista, USA)
Emerging techniques:   XFEL by Janos Hajdu (Uppsala, Sweden): "The basic 
principles of the X-ray free electron laser technology and molecular imaging"
Afternoon tutorial by Bernhard Rupp on "Refinement, validation, COOT, PDB, 
PDB_REDO"
Afternoon lecture By Manfred Weiss on the X-ray beamlines at BESSY, Berlin, 
Germany

Tuesday, May 19 (dataprocessing):
XDS, Manfred Weiss (BESSY, Berlin, Germany) (also XDSapp as available at Bessy)
iMOSFLM, Harry Powell (LMB, Cambridge, UK)  (also data processing pipelines at 
Diamond)
Tuesday-afternoon tutorial on XDS (Weiss)

Wednesday, May 20 (phasing):
Experimental phasing by SHELX, Thomas Schneider (EMBL, Hamburg, Germany)
Molecular replacement phasing by CCP4, Andrey Lebedev (CCP4, STFC, UK)
Wednesday-afternoon: tutorial on iMOSFLM (Powell)
Wednesday afternoon lecture on neutron crystallography by Dr. Zoe Fisher (ESS, 
Lund, Sweden)

Thursday, May 21:
Thursday morning lecture by Thomas Schneider on the X-ray beamlines at EMBL, 
Hamburg
Thursday morning: tutorial on SHELX (Thomas Schneider)
Thursday afternoon: tutorial on Molecular replacement (Andrey Lebedev)

Friday, May22 (remote datacollection):
Remote data collection at Diamond (Martin Walsh, Diamond, UK)
Good practice for preparing data collection at synchrotrons (Kristian Koski, 
FBMM, University of Oulu, Finland)
Crystal sample management and data tracking from crystal to PDB by xtalPiMS (Ed 
Daniel, FBMM,

University of Oulu, Oulu, Finland)



Application instructions

In order to apply to the course please apply by sending the following documents 
to Lari Lehti? (lari.lehtio (at) oulu.fi) by 15.01.2015 The applications will 
be reviewed and all the participants will be informed about the decision in the 
end of January 2015.

Include in your application a pdf of

  1.  your CV
  2.  A motivation letter describing prior experience and why the course would 
be beneficial for you (please include if you will provide crystals and or 
datasets)
  3.  A support letter from your supervisor

Name all the documents similarly: surname_motivation_letter.pdf etc.

For the email use a subject line: Application for the X-ray course



Best regards,

Lari Lehti?/Kristian Koski/Tiila Kiema/Rik Wierenga


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