Dear Pietro,
Tim's solution should work for you. If not please let me know.
From CCP4 6.5.0 (due very soon), the default sequence search tool in
MrBUMP will be Phmmer which will be included in the suite on all
supported operating systems. So there won't be the need to download
fasta separately.
Best wishes,
Ronan
On 15/12/14 16:47, Tim Gruene wrote:
Dear Pietro,
zlib is the C compression library. You must have some version of libz.so
installed in order to link againt it.
Regards,
Tim
On 12/15/2014 05:36 PM, Pietro Roversi wrote:
Dear all,
I apologise for the dullness of the question, but I am struggling to compile
the fasta36 binary that I need to run MrBump:
emmaWT:/software/fasta-36.3.7/src> sudo make -f ../make/Makefile.linux64_sse2
all
gcc -g -O -msse2 -o ../bin/fasta36 comp_mthr9.o work_thr2.o pthr_subs2.o
compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o
apam.o doinit.o init_fa.o drop_nfa.o wm_align.o calcons_fa.o scale_se.o
karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o url_subs.o
mrandom.o -lm -lz -lpthread
/usr/bin/ld: cannot find -lz
collect2: error: ld returned 1 exit status
make: *** [fasta36] Error 1
Googling for this -lz ld flag does not seem to hit anything immediately
relevant in the top pages.
Please help!
Pietro
Sent from my Desktop
Dr. Pietro Roversi
Oxford University Biochemistry Department - Glycobiology Division
South Parks Road
Oxford OX1 3QU England - UK
Tel. 0044 1865 275339
