Re: [ccp4bb] extracting PHENIX structures (help-6435)

[PC]

Thank you, Rachel. I will try this suggestion out. 

-----Original Message-----
From: kra...@rcsb.rutgers.edu
Sent: Mon, 26 Jan 2015 09:22:00 -0700
To: patrick.coss...@inbox.com
Subject: Re: [ccp4bb] extracting PHENIX structures (help-6435)

Dear Patrick,

You can try to write a script to parse the 'software.classification' category (see http://mmcif.wwpdb.org/dictionaries/mmcif_pdbx_v40.dic/Categories/software.html) in the mmCIF file where:

_software.classification = refinement
and
_software.name = PHENIX

 Please let us know if we can be of additional assistance.

Sincerely,
Rachel Green

 

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Rachel Kramer Green, Ph.D.

RCSB PDB

kra...@rcsb.rutgers.edu

 

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On 1/24/2015 10:41 AM, Patrick wrote:

Hi,

not directly related but I wanted to know how to extract from the PDB all the PHENIX/CCP4 refined structures currently deposited.

Do I use the "text" search in quarry to get the result or do I use the software?

I tried it for both but seems to give different results (no's).

I tried for another refinement package (shelx) and same, different no's

Using software, and looking for contains 320 

using text search 130

Is there another way to get structure of a certain resolution ?

Patrick

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