The program chimera will align homologous structures from which you can
generate a sequence alignment (based on the structural alignment)
http://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/matchalign/matchalign.html
~JH
On 05.02.2015 14:41, Kgosisejo, Oarabile wrote:
Hi all,
Does anyone know of a program to use to superpose only selected
protein residues, e.g. enzyme active site residues. I solved my
structure using molecular replacement now I want to compare its active
site to those of homologous structures. I have used the DALI server
before but I had to upload the whole model.
Thank you for your advise
BEST REGARDS,
Oarabile M. Kgosisejo, MSc. Candidate
University of Saskatchewan
o.kgosis...@usask.ca
