Hi, I just checked the PIC sever tim suggested. very nice indeed. If you only want to map different interfaces and the amino acids involved in, I suggest to run the pisa server, too. http://www.ebi.ac.uk/pdbe/pisa/ . I used it extensively to find out whether a certain set of crystal contacs leads to a certain crystal packing. best, matthias
>>> Tim <tim.schu...@rub.de> 11.03.15 18.25 Uhr >>> Hi, Molprobity is also a nice software to do this kind of analysis - if you use it as implemented in phenix you also get good visualization in coot. I also asked the pymol community to create an implementation for pymol, but I did not follow if somebody took that up. Also this 'protein interactions calculation' server is very neat: http://pic.mbu.iisc.ernet.in/ /Tim On 10/03/15 11:25, Debasish Kumar Ghosh wrote: > Dear All, > > Apologies for this little off-topic inquiry. I want to closely visualize the > interacting residues in an multimeric protein complex to understand the > nature of interactions. Is there any good software to give this information > with good clarity. > Any suggestion is highly appreciated. > > Thanks, > Best !!! > > Debasish Kumar Ghosh > > CSIR- Junior Research Fellow (PhD Scholar) > C/o: Dr. Akash Ranjan > Computational and Functional Genomics Group > Centre for DNA Fingerprinting and Diagnostics > Hyderabad, INDIA > > Email(s): dkgh...@cdfd.org.in, dgho...@gmail.com > Telephone: 0091-9088334375 (M), 0091-40-24749396 (Lab) > Lab URL: > http://www.cdfd.org.in/labpages/computational_functional_genomics.html >
