Check the cid file has labelled this modified amino acid as L-peptide.. it is in the records at the top. REFMAC tries to link anything labelled as peptide which is a) close to its links and b) numbered appropriately only if that L-peptide flag is there..
Eleanor On 30 May 2015 at 16:40, Tim Gruene <[email protected]> wrote: > Hello, > > did you check what the log file of refmac says? It may give a clue about > what is going on. > > Regards, > Tim > > On 05/29/2015 11:26 PM, Bio Physics wrote: > > Hi all, > > > > I have a modified amino acid (covalent complex), during refmac5 > refinement > > it isolated from next residues. Phenix does well though with the same > .cif > > file. > > I know people are doing this every day in refmac. > > Any help please? > > > > -- > -- > Dr Tim Gruene > Institut fuer anorganische Chemie > Tammannstr. 4 > D-37077 Goettingen > phone: +49 (0)551 39 22149 > > GPG Key ID = A46BEE1A > > >
