Do you need to rename the symmetry shifted chsain? Eleanor On 26 June 2015 at 16:33, Carter, Charlie <[email protected]> wrote:
> I'm trying to generate an oligomer using pdbset with the script attached > below. The rotated molecules appear to be oriented properly, but they > cannot be viewed correctly in PYMOL because the cartoon option fails to > connect many of the residues. What am I doing wrong? > > Thanks, > > Charlie > > pdbset XYZIN $1.pdb XYZOUT temp.pdb <<EOF-pdbset > CHAIN A > SYMGEN Y-0.5,-X+0.5,Z > OUTPUT PDB > END > EOF-pdbset >
