THESEUS can do it, and it comes bundled with ccp4 so definitely on-topic. If you want RMSD of “equivalent” amino acids, you must tell THESEUS which residues are equivalent with a sequence alignment. Then use the -I option to get the RMSD (and other stats) of the pdb files in their current orientation. E.g.,
theseus -A cytc.aln -I d1cih__.pdb d1crj__.pdb Cheers, Douglas > On Jun 26, 2015, at 3:52 AM, Kaushik Hatti <hskaus...@gmail.com> wrote: > > Hi, > > Is there a tool which can calculate C-beta RMSD for equivalent amino acids of > homologous structures, post C-alpha superposition? > > Sorry if its off topic, > Thanks, > Kaushik > > -- > Stupidity is everyone’s birthright. However, only the learned exercise it! > --Kaushik (28Oct2014) > _______________________________________________ > phenixbb mailing list > pheni...@phenix-online.org > http://phenix-online.org/mailman/listinfo/phenixbb > Unsubscribe: phenixbb-le...@phenix-online.org
