This is interesting! I noticed that for omit maps (the only maps for which I make pictures) I had to use much lower contour levels as in the past. I thought it was due to the maximum likelihood programs, but now it seems that the contouring in Pymol is to blame.
Best, Herman -----Ursprüngliche Nachricht----- Von: CCP4 bulletin board [mailto:[email protected]] Im Auftrag von Emilia C. Arturo (Emily) Gesendet: Montag, 20. Juli 2015 21:30 An: [email protected] Betreff: Re: [ccp4bb] off-topic: pymol map This is a hot topic, and the answer is not straightforward. It was recently discussed on this BB (and on the PyMOL users list); see: https://www.mail-archive.com/[email protected]/msg39219.html Hope this helps, Emily. On Mon, Jul 20, 2015 at 9:57 AM, Jurgen Bosch <[email protected]> wrote: > Dear Almudena, > > isomesh map, mymap.map, 2.0, site, carve=1.6 > > the 2.0 sets the sigma level of your map. > See also here: > http://www.pymolwiki.org/index.php/Display_CCP4_Maps > > Jürgen > ...................... > Jürgen Bosch > Johns Hopkins University > Bloomberg School of Public Health > Department of Biochemistry & Molecular Biology Johns Hopkins Malaria > Research Institute > 615 North Wolfe Street, W8708 > Baltimore, MD 21205 > Office: +1-410-614-4742 > Lab: +1-410-614-4894 > Fax: +1-410-955-2926 > http://lupo.jhsph.edu > > On Jul 20, 2015, at 9:48 AM, Almudena Ponce Salvatierra > <[email protected]> wrote: > > Dear all, > > I have a pymol session in which I generated a map (isomesh... ) over > my structure. Does any of you know how to display of find out at which > sigma cutoff was it generated? > > Thanks a lot in advance. > > Best wishes, > > Almudena > > -- > Almudena Ponce-Salvatierra > Macromolecular crystallography and Nucleic acid chemistry Max Planck > Institute for Biophysical Chemistry Am Fassberg 11 37077 Göttingen > Germany > >
