Hi Didi, Does the PDB file have unique chain identifiers, or is this a concatenation of multiple chains which us the same identifier? If that's the case, try this:
PyMOL> set retain_order See also: https://pymolwiki.org/index.php/retain_order Hope that helps. Cheers, Thomas On 11 Nov 2016, at 16:30, Didi He <[email protected]> wrote: > Hi all, > > I want to use PyMOL to draw an image of a big protein complex with a virus > capsid-like protein shell and an enclosed enzyme. But it only works in line > mode. If I show it in cartoon mode, most residues went missing. Did anyone > come across the same problem and could you give me some suggestions? > > Thanks very much! > Best wishes, > Didi -- Thomas Holder PyMOL Principal Developer Schrödinger, Inc.
