Dave: This may or may not help. I have not seen this particular error before, but I I have discovered that sometimes coot can crash in newer versions of OSX. I actually keep two "flavors" of coot in my system: one from the CCP4 suite and the other from the Scott lab website. Somehow those two versions can coexist just fine and I can run the other version when one of them crashes.
HTH Ray On Tue, Dec 20, 2016 at 10:10 PM, David Briggs <drdavidcbri...@gmail.com> wrote: > Hi all, > > I'm running Coot 0.8.7 (as distributed with the CCP4 package) on OSX > 10.11.6. > > As soon as I click to enter CA-baton mode, coot crashes (terminal output > pasted below). > > All I have done prior to this is load a pdb and an mtz, build skeletons > and pick a start point. > > Has anyone seen this before, and if so, how did they overcome the problem? > > Thanks in advance, > > Dave > > Symmetry available for this molecule > > INFO:: returning baton atom molecule 12 > > -- baton_next_ca_options > > 4e-12 xyz = ( -16.27, -9.644, 24.54) > > 4e-13 xyz = ( -21.76, -12.59, 26.3) > > 4e-13 xyz = ( -21.32, -13.01, 25.91) > > 4e-13 xyz = ( -21.21, -9.022, 20.87) > > 4e-13 xyz = ( -21.41, -8.895, 20.97) > > 4e-13 xyz = ( -20.59, -13.48, 23.92) > > 4e-13 xyz = ( -20.59, -13.51, 24.55) > > 4e-13 xyz = ( -20.68, -13.39, 25.33) > > 4e-13 xyz = ( -20.6, -9.633, 20.66) > > 4e-13 xyz = ( -20.56, -6.015, 23.94) > > 4e-13 xyz = ( -19.93, -13.38, 23.31) > > 4e-13 xyz = ( -16.4, -8.755, 24.6) > > 4e-13 xyz = ( -16.27, -9.623, 24.57) > > 4e-13 xyz = ( -20.62, -11.67, 21.18) > > 4e-13 xyz = ( -21.17, -12.03, 21.58) > > 4e-14 xyz = ( -20.65, -6.04, 23.86) > > 4e-14 xyz = ( -20.78, -6.085, 23.73) > > 4e-14 xyz = ( -20.6, -10.28, 20.69) > > 4e-14 xyz = ( -20.67, -11.09, 20.91) > > 1e-15 xyz = ( -20.64, -12.43, 21.78) > > 9e-16 xyz = ( -19.34, -13.12, 22.81) > > 4e-16 xyz = ( -19.93, -12.74, 22.08) > > 0 xyz = ( -18.76, -10.22, 27.96) > > 0 xyz = ( -18.75, -9.646, 27.98) > > -- > > Creating a molecule for Baton Atom Guide Points > > !! Warning:: No symmetry available for this molecule > > No Symmetry for this model > > INFO:: Creating directory coot-backup > > INFO:: backup file coot-backup/Baton_Atom_Guide_ > Points_Tue_Dec_20_13:53:53_2016_modification_0.pdb.gz > > /Applications/ccp4-7.0/bin/coot: line 284: 20534 Segmentation fault: 11 > $coot_bin > "$@" > > coot-exe: "/Applications/ccp4-7.0/libexec/coot-bin" > > coot-version: > > /Applications/ccp4-7.0/libexec/coot-bin > > platform: > > /usr/bin/uname > > core: #f > -- > > > [image: --] > > David Briggs PhD > [image: https://]about.me/david_briggs > > <https://about.me/david_briggs?promo=email_sig&utm_source=email_sig&utm_medium=email_sig&utm_campaign=external_links> >
