Dear All, I was wondering in Pymol is there a way to align various NCS protein dsDNA complex structure in asymmetric unit based on the double helix of DNA?
I can do the align with the protein part with action-->align--> to molecule or to selection. But this way does not work out if I select dsDNA and do the align to selection. I also tried to used command align obj 01 and chain X, obj 02 and chain Y to align dsDNA, but still failed with message "invalid selection for alignment". thanks ahead for any input.
