On 18/09/2017 16:18, Vikram Dalal wrote:


I am model building a protein in coot. I added Ala residues in coot. I used the real space refinement option to fit in electron density but i got an error (attached in the picture).


Poor coot has become detached from the Refmac monomer library. This is not a 
usual situation.

You should be able to fix it by setting COOT_REFMAC_LIB_DIR to point to the 
refmac monomer library,
for example /applications/coot/coot-0.8.8/share/coot/lib/data/monomers
before you start coot.

But Phenix should be able to squirt in its own monomer library. I'll speak to 
them to see if this is a thing.

Paul

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