Sorry all this was obviously meant for the helpdesk...
Best wishes Graeme
________________________________________
From: CCP4 bulletin board [CCP4BB@JISCMAIL.AC.UK] on behalf of Graeme Winter
[graeme.win...@diamond.ac.uk]
Sent: 26 October 2017 14:56
To: ccp4bb
Subject: [ccp4bb] mtzdmp gives segmentation fault
Folks
I have a data set with 50 wavelengths in - mtzdmp dies as follows:
mtzdmp
/dls/mx-scratch/gw56/LCY/50/process-all-merge-sep/LCY15/scale/LCY_LCY15_sorted.mtz
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<html> <!-- CCP4 HTML LOGFILE -->
<hr>
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<B><FONT COLOR="#FF0000"><!--SUMMARY_BEGIN-->
<pre>
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### CCP4 7.0.044: MTZDUMP version 1.1 : ##
###############################################################
User: gw56 Run date: 26/10/2017 Run time: 14:55:18
Please reference: Collaborative Computational Project, Number 4. 2011.
"Overview of the CCP4 suite and current developments". Acta Cryst. D67, 235-242.
as well as any specific reference in the program write-up.
<!--SUMMARY_END--></FONT></B>
Optional input follows.
Keywords: RESO STATS LRESO HEAD NREF START SKIP SYMM
BATCH FORMAT RUN/GO/END
RESO max min - resolution limits for listing (default all)
STATS [NBIN num] [RESO max min] - no. of reso. bins and limits for stats.
LRESO - S is given for each listed reflection
HEAD - print MTZ file header only
NREF num - number of reflections listed (default 10)
START H0 K0 L0 - first reflection listed (default first)
SKIP nskip - no. of refls. skipped before listing (default 0)
SYMMETRY - list symmetry info
VALM num - missing data set to this value
BATCH - list batch orientation blocks
FORMAT fmt - format of listed refls. .e.g. '(3i4,10f8.2)'
RUN/GO/END - to start dump
OPENED INPUT MTZ FILE
Logical Name: HKLIN Filename:
/dls/mx-scratch/gw56/LCY/50/process-all-merge-sep/LCY15/scale/LCY_LCY15_sorted.mtz
Program received signal 11 (SIGSEGV): Segmentation fault.
Backtrace for this error:
#0 0x00000037a40ac794 in wait () from /lib64/libc.so.6
#1 0x00007f863fdb3fdd in ?? () from
/dls_sw/apps/ccp4/x86_64/7.0/update44/ccp4-7.0/bin/../lib/libgfortran.so.3
#2 0x00007f863fdb584e in ?? () from
/dls_sw/apps/ccp4/x86_64/7.0/update44/ccp4-7.0/bin/../lib/libgfortran.so.3
#3 0x00007f863fdb46aa in ?? () from
/dls_sw/apps/ccp4/x86_64/7.0/update44/ccp4-7.0/bin/../lib/libgfortran.so.3
#4 <signal handler called>
#5 0x00007f864009df61 in ccp4_lrbats () from
/dls_sw/apps/ccp4/x86_64/7.0/update44/ccp4-7.0/bin/../lib/libccp4c.so.0
#6 0x000000000040469b in _start ()
[gw56@cs04r-sc-com99-01 process-all-merge-sep]$ du -hs
/dls/mx-scratch/gw56/LCY/50/process-all-merge-sep/LCY15/scale/LCY_LCY15_sorted.mtz
188M
/dls/mx-scratch/gw56/LCY/50/process-all-merge-sep/LCY15/scale/LCY_LCY15_sorted.mtz
Is this expected?
Thanks Graeme
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