I really need more information to comment properly.
However just check that you are using the same reflections for both Rfree
calculations.

An Rfree of 26% seems low to me from a Se met phased structure at 2.1A -
there are usually small corrections to be made, What is the Rwork?

Maybe attach the REFMAC log file?
Eleanor

On 21 April 2018 at 03:24, 张士军 <[email protected]> wrote:

> Dear all
>
> I have got my se-phase structure with ccp4-CRANK2-SAD, and its Rfree is
> 0.26 when CRANK2 output, but the Rfree is higher to 0.36 when I refine it
> with refmac or phenix-refinement. does it mean I got a wrong phase, or I
> didn't got the right parameters when refinement.BTW, the resolution is
> 2.1A.THANKS A LOT
>
> Best Regards
>
> shijun
>

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