Oak Ridge Thermal Ellipsoid Plot I ________________________________ From: CCP4 bulletin board <CCP4BB@JISCMAIL.AC.UK> on behalf of Keller, Jacob <kell...@janelia.hhmi.org> Sent: 23 January 2019 21:50:57 To: ccp4bb Subject: Re: [ccp4bb] visualising anis B factors
What’s the story with the funny name—does it have to do with its being petro backwards? JPK +++++++++++++++++++++++++++++++++++++++++++++++++ Jacob Pearson Keller Research Scientist / Looger Lab HHMI Janelia Research Campus 19700 Helix Dr, Ashburn, VA 20147 Desk: (571)209-4000 x3159 Cell: (301)592-7004 +++++++++++++++++++++++++++++++++++++++++++++++++ The content of this email is confidential and intended for the recipient specified in message only. It is strictly forbidden to share any part of this message with any third party, without a written consent of the sender. If you received this message by mistake, please reply to this message and follow with its deletion, so that we can ensure such a mistake does not occur in the future. From: CCP4 bulletin board <CCP4BB@JISCMAIL.AC.UK> On Behalf Of Mooers, Blaine H.M. (HSC) Sent: Wednesday, January 23, 2019 4:17 PM To: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] visualising anis B factors Dear Eleanor, Ethan Merritt's rastep program is a sort of color version of ortep. It gives beautiful figures. http://skuld.bmsc.washington.edu/raster3d/html/rastep.html Best regards, Blaine Blaine Mooers, Ph.D. Associate Professor Department of Biochemistry and Molecular Biology College of Medicine University of Oklahoma Health Sciences Center S.L. Young Biomedical Research Center (BRC) Rm. 466 975 NE 10th Street, BRC 466 Oklahoma City, OK 73104-5419 ________________________________ From: CCP4 bulletin board [CCP4BB@JISCMAIL.AC.UK] on behalf of Diana Tomchick [diana.tomch...@utsouthwestern.edu] Sent: Wednesday, January 23, 2019 3:01 PM To: CCP4BB@JISCMAIL.AC.UK<mailto:CCP4BB@JISCMAIL.AC.UK> Subject: [EXTERNAL] Re: [ccp4bb] visualising anis B factors Hi Bob, You might recognize this manual. Diana ************************************************** Diana R. Tomchick Professor Departments of Biophysics and Biochemistry UT Southwestern Medical Center 5323 Harry Hines Blvd. Rm. ND10.214A Dallas, TX 75390-8816 diana.tomch...@utsouthwestern.edu<mailto:diana.tomch...@utsouthwestern.edu> (214) 645-6383 (phone) (214) 645-6353 (fax) [cid:image001.jpg@01D4B33B.CB9307C0] On Jan 23, 2019, at 2:07 PM, Sweet, Robert <000027e0eb9d20ec-dmarc-requ...@jiscmail.ac.uk<mailto:000027e0eb9d20ec-dmarc-requ...@jiscmail.ac.uk>> wrote: Please remember Carrol Johnson and colleagues. In 1965 from Oak Ridge National Lab they released a FORTRAN program, ORTEP, that would write instructions for a CalComp plotter, not only to make a molecular drawing showing thermal ellipsoids, but also to create them IN STEREO! This program revolutionized crystallographic publishing, not so much for the ellipsoids, but for the easy visualization of ones molecules in three dimensions. It seems so easy now. Bob ================================================ Robert M. Sweet E-Dress: sw...@bnl.gov<mailto:sw...@bnl.gov> Deputy Director, LSBR: The Life Science and Biomedical Technology Research Center at NSLS-II Photon Sciences and Biology Dept Brookhaven Nat'l Lab. Upton, NY 11973 U.S.A. Phones: 631 344 3401 (Office) 631 338 7302 (Mobile) ================================================ ________________________________ From: CCP4 bulletin board <CCP4BB@JISCMAIL.AC.UK<mailto:CCP4BB@JISCMAIL.AC.UK>> on behalf of Eleanor Dodson <0000176a9d5ebad7-dmarc-requ...@jiscmail.ac.uk<mailto:0000176a9d5ebad7-dmarc-requ...@jiscmail.ac.uk>> Sent: Wednesday, January 23, 2019 1:46:29 PM To: CCP4BB@JISCMAIL.AC.UK<mailto:CCP4BB@JISCMAIL.AC.UK> Subject: Re: [ccp4bb] visualising anis B factors Thank you! I still love the BB Eleanor On Wed, 23 Jan 2019 at 16:24, Christian Roth <christianroth...@gmail.com<mailto:christianroth...@gmail.com>> wrote: In ccp4mg it is the representation tab --> Thermal ellipsoids On Wed, Jan 23, 2019 at 4:51 PM Oliviero Carugo <oliviero.car...@univie.ac.at<mailto:oliviero.car...@univie.ac.at>> wrote: You might be interested in Chimera too (--> Tools --> Structure Analysis --> Thermal ellipsoids) On 23.01.2019 16:17, Eleanor Dodson wrote: > Is there any easy way to do this? > > Coot? ccp4mg? > > Eleanor Dodson > > ------------------------- > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1<https://urldefense.proofpoint.com/v2/url?u=https-3A__www.jiscmail.ac.uk_cgi-2Dbin_webadmin-3FSUBED1-3DCCP4BB-26A-3D1&d=DwMFAg&c=VjzId-SM5S6aVB_cCGQ0d3uo9UfKByQ3sI6Audoy6dY&r=k0gMbcsdOcdbPUNV5tW66KQSZfXL0ewVDPVBp7tqbks&m=qYbNjgMNEXXJnRyAUSsbJdcvilCpxXvVQO6rwls6Bm4&s=dI-dP0Zkve0uiWEn3o04VcZinDN49VqmtKv3vK015zA&e=> ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1<https://urldefense.proofpoint.com/v2/url?u=https-3A__www.jiscmail.ac.uk_cgi-2Dbin_webadmin-3FSUBED1-3DCCP4BB-26A-3D1&d=DwMFAg&c=VjzId-SM5S6aVB_cCGQ0d3uo9UfKByQ3sI6Audoy6dY&r=k0gMbcsdOcdbPUNV5tW66KQSZfXL0ewVDPVBp7tqbks&m=qYbNjgMNEXXJnRyAUSsbJdcvilCpxXvVQO6rwls6Bm4&s=dI-dP0Zkve0uiWEn3o04VcZinDN49VqmtKv3vK015zA&e=> ________________________________ To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1<https://urldefense.proofpoint.com/v2/url?u=https-3A__www.jiscmail.ac.uk_cgi-2Dbin_webadmin-3FSUBED1-3DCCP4BB-26A-3D1&d=DwMFAg&c=VjzId-SM5S6aVB_cCGQ0d3uo9UfKByQ3sI6Audoy6dY&r=k0gMbcsdOcdbPUNV5tW66KQSZfXL0ewVDPVBp7tqbks&m=qYbNjgMNEXXJnRyAUSsbJdcvilCpxXvVQO6rwls6Bm4&s=dI-dP0Zkve0uiWEn3o04VcZinDN49VqmtKv3vK015zA&e=> ________________________________ To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1<https://urldefense.proofpoint.com/v2/url?u=https-3A__www.jiscmail.ac.uk_cgi-2Dbin_webadmin-3FSUBED1-3DCCP4BB-26A-3D1&d=DwMFAg&c=VjzId-SM5S6aVB_cCGQ0d3uo9UfKByQ3sI6Audoy6dY&r=k0gMbcsdOcdbPUNV5tW66KQSZfXL0ewVDPVBp7tqbks&m=qYbNjgMNEXXJnRyAUSsbJdcvilCpxXvVQO6rwls6Bm4&s=dI-dP0Zkve0uiWEn3o04VcZinDN49VqmtKv3vK015zA&e=> ________________________________ UT Southwestern Medical Center The future of medicine, today. ________________________________ To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1<https://urldefense.proofpoint.com/v2/url?u=https-3A__www.jiscmail.ac.uk_cgi-2Dbin_webadmin-3FSUBED1-3DCCP4BB-26A-3D1&d=DwMFAg&c=VjzId-SM5S6aVB_cCGQ0d3uo9UfKByQ3sI6Audoy6dY&r=k0gMbcsdOcdbPUNV5tW66KQSZfXL0ewVDPVBp7tqbks&m=qYbNjgMNEXXJnRyAUSsbJdcvilCpxXvVQO6rwls6Bm4&s=dI-dP0Zkve0uiWEn3o04VcZinDN49VqmtKv3vK015zA&e=> ________________________________ To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1 ________________________________ To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1 -- This e-mail and any attachments may contain confidential, copyright and or privileged material, and are for the use of the intended addressee only. 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