Hi Reza,
you could also use Endscript, it is designed for this purpose.
http://endscript.ibcp.fr/ESPript/ENDscript/
Best
Vincent
Le 17/03/2019 à 01:52, Reza Khayat a écrit :
Hi,
Thanks. Several suggestions have been made:
1. UCSF Chimera can plot %ID and %Similarity
2. Consurf can plot conservation scores
3. AL2CO can also plot conservation scores
I have a protein with a fast molecular clock, so I need to think about this a
bit more.
Best wishes,
Reza
Reza Khayat, PhD
Assistant Professor
City College of New York
Department of Chemistry
New York, NY 10031
________________________________________
From: Clarke, Oliver <[email protected]>
Sent: Saturday, March 16, 2019 8:36 PM
To: Reza Khayat
Subject: [EXTERNAL] Re: CCP4BB Digest - 15 Mar 2019 to 16 Mar 2019 (#2019-81)
Hi Reza
You can do more or less this using the ConSurf server - or just load up your
sequence alignment in Chimera, then you can assign %Id or similarity as a per
residue attribute.
Cheers
Oli
On Mar 16, 2019, at 8:03 PM, CCP4BB automatic digest system
<[email protected]> wrote:
There is 1 message totaling 85 lines in this issue.
Topics of the day:
1. Sequence variability mapped on a PDB
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----------------------------------------------------------------------
Date: Sat, 16 Mar 2019 23:42:18 +0000
From: Reza Khayat <[email protected]>
Subject: Sequence variability mapped on a PDB
?Hi,
Can someone direct me to a program that can replace the B-factors of a PDB with
sequence variability calculated from a sequence alignment? I'm have tried the
PVS server, but my sequence alignment is too large for its liking. Thanks.
Best wishes,
Reza
Reza Khayat, PhD
Assistant Professor
City College of New York
Department of Chemistry
New York, NY 10031
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End of CCP4BB Digest - 15 Mar 2019 to 16 Mar 2019 (#2019-81)
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MMSB -UMR5086
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