Dear Stephen, PyMOL can do it. You have to choose your atom and then use following command: select your-name, (sele) expand 10; where (sele) is your selection - atom or a group of atoms and 10 is the radius in AA. Best regards, Petr
________________________________________ From: CCP4 bulletin board <CCP4BB@JISCMAIL.AC.UK> on behalf of Stephen Cusack <cus...@embl.fr> Sent: Wednesday, April 3, 2019 4:18:49 PM To: CCP4BB@JISCMAIL.AC.UK Subject: [ccp4bb] select from a pdb file a sphere of atoms Dear All, I am looking for an accessible programme that allows selection of atoms from a PDB file within a sphere of inputted radius from a central atom. Thanks for any help, Stephen Cusack -- ********************************************************************** Dr. Stephen Cusack, FRS Head of Grenoble Outstation of the European Molecular Biology Laboratory (EMBL) Group leader in structural biology of protein-RNA complexes and viral proteins ********************************************************************** Email: cus...@embl.fr Website: http://www.embl.fr Tel: (33) 4 76 20 7238 Secretary (33) 4 76 20 7123 Fax: (33) 4 76 20 7199 Postal address: EMBL Grenoble Outstation, 71 Avenue des Martyrs, CS 90181, 38042 Grenoble Cedex 9, France Delivery address: EMBL Grenoble Outstation, Polygone Scientifique, 71 Avenue des Martyrs, 38000 Grenoble, France ********************************************************************** ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1 ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1
