Not a solution to your problem - just a way to avoid it.. I always put the
waters into the original file - you can always delete them or change the
occupancy if there is a clash..
Eleanor

On Tue, 30 Apr 2019 at 21:21, Jonathan Cooper <
00000c2488af9525-dmarc-requ...@jiscmail.ac.uk> wrote:

> One thing I have wondered about Coot is when you add new waters into the
> structure and these go into a molecule called 'Pointer Atoms...', I have
> never worked out how to get the symmetry mates of these newly inserted
> waters to appear unless I eventually merge them into the same pdb file as
> the protein.
>
> As an example, here is a newly inserted water molecule (A6) in
> Pointer-Atoms close to a 2-fold:
>
> http://www.ucl.ac.uk/~rmhajc0/watersym.jpg
>
> Is there a trick to get its symmetry mate to appear without merging the
> pdb's?
>
> I am trying to avoid the situation where you accidentally build two or
> more waters into the same density because the symmetry mates are not
> showing and have to go through all the waters again afterwards to sort it
> out. I have checked the 'Show Symmetry' box for that molecule and I have
> tried changing the radius, etc.
>
> Any clues much appreciated.
>
> Jon.C.
>
>
>
>
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