Hi all It’s been a while since I posted on this group so apologies for a slightly tangential, non CCP4 question.
I wanted to get secondary structure predictions for designing a library of 50-100 amino acid peptides. The library could get very large ( 10^9) and I was wondering if there is a way to predict the secondary structure for this large set of sequences that scales well. I am currently using psipred which works well, but runs one sequences at a time and generates the desired prediction with concurrent creation of many temp files. Although I realize this is solvable with the current approach, by parallelizing the calls I was wondering if there are other approaches that are suitable for this. Thanks for your help in advance Hari Jayaram ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1
