Hi Armando, This seems doable with ChimeraX: https://www.cgl.ucsf.edu/chimerax/ <https://www.cgl.ucsf.edu/chimerax/>
More specifically, its matchmaker command will align two structures and print the corresponding sequence alignment: https://www.cgl.ucsf.edu/chimerax/docs/user/commands/matchmaker.html <https://www.cgl.ucsf.edu/chimerax/docs/user/commands/matchmaker.html> You can then save the sequence alignment to a file, and use it in your favorite sequence alignment program along with the sequences for which you don’t have a structure. This is one option among many, as pretty much every structure visualization program can superimpose two similar structures (but I don’t know how many of them make it as easy to save the sequence alignment). Hope this helps, Guillaume > On 8 Apr 2020, at 19:04, Armando Albert <[email protected]> wrote: > > Dear all, > I want to align two structures and then, I want to align several sequences to > that structural alignment. > How can I do this? > Armando > > ######################################################################## > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1 ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1
