This may be a basic question, but a few google searches did not turn up
anything helpful.

I am trying to deposit a structure, from data reduced with HKL2000 and
solved and refined with Phenix. The data were scaled with the Anomalous
option selected.

For depositing, I upload the coordinates, the *_refine_data.mtz file from
Phenix, and the *.log file from HKL2000 scaling. When I do this, the PDB
deposition website complains on the Data Collection Statistics page that
the "Number of unique reflections measured" (16343) "Has value < Total
number of reflections refined against (see Refinement page) [23562]"

When I open the original sca file in Phenix, I see:
Number of Miller indices: 31365
Bijvoet pairs: 15030

What is the correct way to reconcile these numbers for the deposition?

Thanks,
- Igor Petrik, PhD

P.S. I collected and processed the data 5+ years ago, and no longer have
access to HKL2000.

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