On 18/02/2021 15:21, Neno Vuksanovic wrote:
I've been having an issue when manually adding C-terminal residue in Coot (I add a terminal residue, then add OXT atom, and perform real space refinement). The residue links the previous one properly and the density matches it well, but after refining in Phenix.refine, the residue is unconnected from the rest of the chain. The log file does not mention having any issues with it. Do I need to change the linking settings in Phenix.refine and what could be causing the issue?
Why don't you tell us which version of Coot that you're using? Old Coots used to not properly handle TER records on chain extension. Maybe it's that. Paul. ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
