Hi all,
Following up on this: some time ago, Martyn Winn was kind enough to put the
source of a bunch of old Uppsala Software Factory programs in GitHub:
https://github.com/martynwinn/Uppsala-Software-Factory
It's all unsupported now (I haven't compiled anything in 12 years...) but free
to do with whatever you like.
(The website in Uppsala has unfortunately not been accessible for several
months already. This means that the manuals are not online. If there is
interest I could post a tgz file with -as far as I can determine- the latest
version of all manuals in HTML format (0.8 MB total).)
--Gerard
On Wed, 3 Mar 2021, James Holton wrote:
Yes, I stand corrected. "mapmask" is the CCP4 program.
mapman is still around. I even found a way to get it to work on 64-bit!
https://git.bl831.als.lbl.gov/jamesh/map-bender/-/blob/master/mapman_regression_test.csh
-James Holton
MAD Scientist
On 3/3/2021 9:10 AM, Jon Cooper wrote:
For old-schoolers, mapmask (once known as extend) in ccp4 does this.
Mapman was from the Upsala suite and became XDLmapman in ccp4, but then
became unusable and disappeared. I liked the original mapman as you had to
actually give a name for your map, like 'jim' or 'jon'.
Best wishes, Jon Cooper
Sent from ProtonMail mobile
-------- Original Message --------
On 1 Mar 2021, 21:19, James Holton < jmhol...@lbl.gov> wrote:
The CCP4 program you are looking for is called "mapman", and the
option you need is "border".
-James Holton
MAD Scientist
On 2/26/2021 8:07 AM, Horrell, Sam (DLSLtd,RAL,LSCI) wrote:
Hello BB,
I’m trying to make an image of some electron density in pymol but
am running into a problem, my atoms are half in and half out of
the unit cell so I only get half the density.
Has anyone ran into this problem previously, and if so, is there
a way to shift the origin, extend the map, or something so
everything is covered?
I realise this is not a ccp4 problem exactly, so I am ready for
the inevitable replies, but I imagine a program in ccp4 might be
the answer.
Cheers,
Sam
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