On Thu, 2021-04-01 at 15:02 +0200, Fred Vellieux wrote: > Hello there, > > After running autodock vina on certain small molecules, the graphics > software I am using (e.g. Pymol, Coot) draws far too many bonds on the > docked small molecule. See enclosed screen capture. > > Is there any way to prevent this from happening? This isn't very > satisfactory of you wish to produce figures for a presentation or for > publication. >
Is this a fish of the month? It looks like you are drawing a mol file (with bond lengths equal to 1). Is that right? You need to convert it to a 3D molecule using Acedrg or some such. Paul. ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
