Hi folks,
I'm trying to run Ligplot on a PDB file that contains a residue with
type UNL (Unknown Ligand). I hadn't been using LigPlot for perhaps 2
years now (which means that I had to reinstall, with an expired license,
and get familiar with it again). I get the following error message
(rather cryptic):
Calling HBADD ...
Running HBADD
Het Group Dictionary: /components.cif
Temporary PDB file: /tmp/lig7141158588178475829/ligplus.pdb
Command: /LigPlus/lib/exe_linux/hbadd
/tmp/lig7141158588178475829/ligplus.pdb /components.cif -wkdir
/tmp/lig7141158588178475829/
java.io.IOException: Cannot run program "/LigPlus/lib/exe_linux/hbadd":
error=2, No such file or directory
Other event: state
Would anyone know what to make out of this message ? Otherwise is there
another piece of software (called "app" nowadays) that could provide me
with similar drawings ?
At some stage I ran PRODRG, introduced the cif file in the file
components.cif used by LigPlot (LigPlus). I also replaced the coordinate
files by those returned by the PRODRG run. Always with the same cryptic
error message provided by the software (oops, app).
Thanks,
Fred.
--
MedChem, 1st F. Medicine, Charles University
BIOCEV, Vestec, Czech Republic
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