To improve the clarity of assembly definitions in curation, wwPDB now
makes curated PDB assemblies available for depositors to view in OneDep
using the Mol* viewer.
One of the important processes in curation of PDB entries is the
definition of assemblies for each structure. This helps users of PDB
data to understand the structure in the context of its complex formation
in the specific experimental conditions.
To ensure that assemblies are curated correctly, they are reviewed by
annotators at the time of curation before being reported back to the
depositors after the curation process.
The deposition system in OneDep has now been enhanced so that after
curation, the annotated assembly is displayed in the Mol* 3D viewer
<https://molstar.org/> for depositors to review. This viewer is
available in a new Review section in the deposition interface, which is
present after curation of the entry. The Mol* viewer can display PDB
structure data within the browser with minimal memory requirements,
therefore making it quick and easy to visually display assembly information.
These changes will help improve the validation and reporting of curated
assemblies during the deposition process.
The assembly review page, as displayed for depositors after curation of
the entry. The curated assembly is displayed in the Mol* 3D viewer,
within the browser.
The assembly review page, as displayed for depositors after curation of
the entry. The curated assembly is displayed in the Mol* 3D viewer,
within the browser.
http://www.wwpdb.org/news/news?year=2021#604a58800769342b1f3d04b1
<http://www.wwpdb.org/news/news?year=2021#top>
--
Regards,
Jasmine
===========================================================
Jasmine Young, Ph.D.
Biocuration Team Lead
RCSB Protein Data Bank
Research Professor
Institute for Quantitative Biomedicine
Rutgers, The State University of New Jersey
174 Frelinghuysen Rd
Piscataway, NJ 08854-8087
Email: jasm...@rcsb.rutgers.edu
Phone: (848)445-0103 ext 4920
Fax: (732)445-4320
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