Dear Misha, There is a program in ccp4 called contacts that will give you this information. You can alter entry parameters to show you the relevant information. I think you can also try PISA server from EMBL-EBI. I reckon both these programs show you all distances and you may have to manually pick out the shortest ones.
Regards Hari On Wednesday, May 19, 2021, 16:54, Isupov, Michail <[email protected]> wrote: #yiv2028539353 P {margin-top:0;margin-bottom:0;} Hi I am wondering if there is a simple program that would convert a pdb file into a matrix that shows the smallest distance between all pairs of amino-acid side chains? Thanks, Misha To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
