Hi community,

I'd like to calculate Ca-RMSD between two related structures without any
structure superposition using a running window of say few amino acids, and
map them onto the mobile structure with color-coding. Does anyone have a
script for the same?

Thanks in advance.


Ashok Nayak
Post-Doctoral Fellow,
Department of Physiology and Biophysics
VCU Medical Centre,1101 E Marshall ST,
Richmond,VA
USA

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