Hi everyone, Thank you for the replies so far on and off list, they are really helpful. Feel free to keep them coming.
Cheers, Robbie > -----Original Message----- > From: CCP4 bulletin board <[email protected]> On Behalf Of Dirk > Kostrewa > Sent: Tuesday, August 31, 2021 10:24 > To: [email protected] > Subject: Re: [ccp4bb] Some questions on tools for CCP4i2cloud: pdbset, > pdbcur, coordconv, sftools > > Dear Robbie, > > I use pdbset in scripts from time to time, mainly to generate symmetry > equivalent copies. I use sftools on the command line more frequently, > because it allows a lot of mathematical operations on data in mtz files. > I also use sftools to produce lists of average data values against > resolution (that I plot then with gnuplot). I can't recall having used > coordconv at all. > > Best regards, > > Dirk. > > On 8/26/21 12:29 PM, Robbie Joosten wrote: > > Dear CCP4 users, > > > > We (as in, the CCP4 developers) are investigating some (potentially) > missing functionality in CCP4i2 and/or Cloud with respect to the programs > pdbset, pdbcur, coordconv, and sftools. Some of these tools are quite old > and may need to be replaced by other tools with similar functionality. Could > you answer a few questions: > > > > - Do you use any of these tools? > > - If so, how often? (Few times a week, month, year, or less than once a > year). > > - Which functionality of program X do you use? > > - Would you like a graphical interface to that functionality or are you > > happy > to use the command line? > > > > Personal example: > > I use pdbset a few times a month, but only the "noise" function. I don't > need a graphical interface for it (because it is used in the context of pdb- > redo). I also use sftools, "reduce -> merge average" a few times a year. > Again, > only from the command line. > > > > > > Feel free to send your answers directly to me or to the bulletin board if > you want to start a discussion. Tips on alternative CCP4 tools to achieve > similar effects are probably also interesting for other BB users. > > > > Cheers, > > Robbie > > > > > > > > > > > ############################################################### > ######### > > > > To unsubscribe from the CCP4BB list, click the following link: > > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > > > > This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a > mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at > https://www.jiscmail.ac.uk/policyandsecurity/ > > -- > > ******************************************************* > Dirk Kostrewa > Gene Center Munich > Department of Biochemistry, AG Hopfner > Ludwig-Maximilians-Universität München > Feodor-Lynen-Str. 25 > D-81377 Munich > Germany > Phone: +49-89-2180-76845 > Fax: +49-89-2180-76998 > E-mail: [email protected] > [email protected] > WWW: www.genzentrum.lmu.de > ******************************************************* > > ############################################################### > ######### > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > > This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a > mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at > https://www.jiscmail.ac.uk/policyandsecurity/ ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
