Amazing Charles - it now worked. I don't know how it came around but I got suspicious about the state of the computer when a new pymol download won't launch properly either. So I gave the computer a reboot.
Now it seems that the pymol is up and running, so is the CCP4 compilation. I just checked, the CCP4i and coot are now running as expected. I really would like to copy the whole BB to express my gratitude - kudos, Charles, -yong Yong Tang, Ph.D. Director, Structure Biology ENSEM Therapeutics 200 Boston Ave, Suite 1875 Medford, MA 02155 yong.t...@ensemtx.com P.S. I followed this link below: > > > > https://kpwulab.com/2021/05/25/install-ccp4-on-mac/ > > > > 1. Download CCP4 mac version <http://www.ccp4.ac.uk/download/#os=mac> > from > official site, I prefer getting the full package (1.5-1.7 GB, depends). > > 2. Click and unpack the CCP4 packages > > 3. move the CCP4 package to proper location. For example, move to > /Applications/Science (Science is the folder I created for my own work > apps). > > 4. Turn on XQuartz <https://www.xquartz.org/> (install this one > first), have a terminal open, go to the /Applications/Science/CCP4 in the > terminal > > 5. *sudo xattr –rc /Applications/ccp4-7.1* > > 6. Run BINARY.setup (ie. sudo ./BINARY.setup). It takes few minutes > to compile and install scripts. > > 7. After step 5, source the CCP4 setup script. I use tcsh > source bin/ccp4-setup.csh > > 8. type ccp4i or coot to see if the programs open without any error. > > 9. Add the setup script in tcshrc for connivence > vi .tcshrc –> add: source /Applications/Science/CCP4/bin/ccp4-setup.csh > > 10. reopen XQuartz. CCP4 should be ready for use. > > > > On Thu, Sep 30, 2021 at 5:10 AM Charles Ballard - STFC UKRI < > charles.ball...@stfc.ac.uk> wrote: > > Hi Yong > > > > What I normally do is > > > > sudo xattr –rc /Applications/ccp4-7.1 > > > > getting rid of the extended attributes seems to fix > > > > Charles > > > > *From:* CCP4 bulletin board <CCP4BB@JISCMAIL.AC.UK> *On Behalf Of *Yong > Tang > *Sent:* 29 September 2021 22:17 > *To:* ccp4bb <ccp4bb@jiscmail.ac.uk> > *Subject:* [ccp4bb] Security blockage: CCP4 installation on macOS Big Sur > > > > Dear all, > > I downloaded the latest mac version of CCP4 suite for installation on a > new Mac (macOS Big Sur Version 11.5.2). The package was downloaded using > Chrome. After unpacking and moving the folder to its destination > /Applications/ccp4-7.1, the set up using > > ./BINARY.setup > > gives error messages that the app was downloaded via Chrome and that > "macOS cannot verify that this app is free from malware". > > I tried using "sudo" but that didn't help. > > Do you have a quick pointer for me? > > Many thanks, -yong > > ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
