So... how can I get a metric for noise in electron density maps? First thing that occurred to me open in coot and do validate->difference map peaks-> get number of peaks (is this scriptable?) or Second phenix.real_space_correlation detail=residue file.pdb file.mtz
Thanks again El mié, 27 de oct. de 2021 a la(s) 10:52, vincent Chaptal ( [email protected]) escribió: > Hi, > > It's hard to find a single metric... > Ultimately, the quality of electron density maps, lower noise in fo-fc? > > Best > Vincent > > Le 27/10/2021 à 17:44, Murpholino Peligro a écrit : > > Let's say I ran autoproc with different combinations of options for a > specific dataset, producing dozens of different (but not so different) mtz > files... > Then I ran phenix.refine with the same options for the same structure but > with all my mtz zoo > What would be the best metric to say "hey this combo works the best!"? > R-free? > Thanks > > M. Peligro > > ------------------------------ > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > > > -- > > Vincent Chaptal, PhD > > Director of GdR APPICOM > > Drug Resistance and Membrane Proteins Lab > > > MMSB -UMR5086 > > 7 passage du Vercors > > 69007 LYON > > FRANCE > > +33 4 37 65 29 01 > > http://www.appicom.cnrs.fr > > http://mmsb.cnrs.fr/en/ > > > > ------------------------------ > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
