I am not sure whether I have this straight but someone has sent a pdb file
from phenix refinement with these atoms in the pdb file..
....
ATOM   5580  N   GLY S  18      36.182  44.368  56.021  1.00 79.25
  N
ATOM   5581  CA  GLY S  18      37.168  44.349  57.091  1.00 74.78
  C
ATOM   5582  C   GLY S  18      37.048  43.211  58.097  1.00 73.20
  C
ATOM   5583  O   GLY S  18      37.043  42.043  57.734  1.00 74.31
  O
ATOM   5584  N   SER S  19      36.992  43.568  59.375  1.00 75.40
  N
...

HETATM11068  O   HOH S  16      68.933  60.684 119.353  1.00 32.35
  O
HETATM11069  O   HOH S  17      17.772  20.649  91.306  1.00 40.79
  O
HETATM11070  O   HOH S  18      23.684  50.229  65.614  1.00 41.00
  O
HETATM11071  O   HOH S  19      45.488  71.114 105.890  1.00 51.50
  O

Then REFMAC gets upset because "residue" S 18 appears twice..

Doesnt PHENIX worry about this? or has the user edits these HOH atoms into
the file?

And what should we do about it
Eleanor

....

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