I would try the tools on this site - http://web.x3dna.org/index.php/protein
From: CCP4 bulletin board <CCP4BB@JISCMAIL.AC.UK> on behalf of "Srivastava,
Dhiraj" <dhiraj-srivast...@uiowa.edu>
Reply-To: "Srivastava, Dhiraj" <dhiraj-srivast...@uiowa.edu>
Date: Monday, December 27, 2021 at 8:32 PM
To: "CCP4BB@JISCMAIL.AC.UK" <CCP4BB@JISCMAIL.AC.UK>
Subject: [ccp4bb] protein DNA complex structure and extension of DNA structure
Hi
I solved the structure of protein DNA complex where the DNA molecule is
bent. I want to extend the DNA computationally so I can model two DNA binding
proteins together on same DNA molecule. is there a way by which I can extend
the DNA in both direction? its easy to do it with ideal DNA molecule but I
don't know how to do it with bent DNA.
Thank you
Dhiraj
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