Hi, It’s not clear why you don’t use MAPMAN if that does what you want. If availability is the problem, it is still here https://github.com/martynwinn/Uppsala-Software-Factory
If you are prepared to do some Python, then 2 other options: https://mrcfile.readthedocs.io/en/latest/readme.html allows you to read in MRC file to a numpy array, and then you can you can average, interpolate, plot as you wish. If your pore axis is aligned along Z and you want to average over the cross section, then this would be relatively straightforward. https://gemmi.readthedocs.io/en/latest/grid.html will also read in maps and manipulate. It understands crystal symmetry, if that is what you have. It also has functions for interpolation. HTH Martyn From: CCP4 bulletin board <[email protected]> On Behalf Of Ravikumar Sent: 13 July 2022 19:18 To: ccp4bb <[email protected]> Subject: [ccp4bb] Help with One dimensional electron density calculation Dear all, I would like to calculate One-dimension electron density profiles of the different number of ions bound to an ion channel. Are there any programs in CCP4/ Phenix which can do the same job as the MAPMAN (UPPSALA electron density server) program to extract the electron density values to plot electron density values versus pore axis? I have attached an example figure. Thank you, Ravikumar. ________________________________ To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This email and any attachments are intended solely for the use of the named recipients. If you are not the intended recipient you must not use, disclose, copy or distribute this email or any of its attachments and should notify the sender immediately and delete this email from your system. UK Research and Innovation (UKRI) has taken every reasonable precaution to minimise risk of this email or any attachments containing viruses or malware but the recipient should carry out its own virus and malware checks before opening the attachments. UKRI does not accept any liability for any losses or damages which the recipient may sustain due to presence of any viruses. ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
