Dear Abhilash,
Starting May 3, 2022, the PDB archive distributes assembly files in
PDBx/mmCIF format. You can access the files here:
ftp.wwpdb.org/pub/pdb/data/assemblies/mmCIF/
Alternatively, you can use the PDBe download service:
https://www.ebi.ac.uk/pdbe/download/
You could retrieve the files and then convert them using MAXIT (you
could make a simple script to run them in batches)?
May I ask for which purpose do you need files in PDB format instead of
mmCIF format?
Kind regards,
Deborah Harrus
PDBe
On 11/07/2022 05:30, Abhilasha Thakur wrote:
Hello,
I have a long list of PDB ids and I needed the all the biological
assembly for each PDB Id, so in this case how I can get these
biological assembly in PDB format.
Please guide me how to get these assemblies, manually it wouldn't be
possible for each PDB I'd.
Thankyou
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Deborah Harrus, Ph.D.
Lead Annotator
PDBe - Protein Data Bank in Europe
European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Hinxton
Cambridge CB10 1SD UK
http://www.PDBe.org
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