PC, mac or linux? -----Original Message----- From: CCP4 bulletin board <CCP4BB@JISCMAIL.AC.UK> On Behalf Of Dale C Sent: Wednesday, 27 July 2022 12:45 PM To: CCP4BB@JISCMAIL.AC.UK Subject: [ccp4bb] Issue with Phenix/Coot/PyMol after installing ccp4 v8
Hi all, I recently updated my ccp4 package to Program suite v8.0.002 and i have now run into a few issues with other programs. The issues are highlighted below... - When i click 'Open in Coot' on any output through Phenix (so far only tested phenix.refine and phenix.phaser), i no longer see anything open. Nor do i see the "Connected to Phenix" button in the toolbar on Coot. - The 'fetch' command in Pymol no longer works either (I have attached a screenshot of the error message here) - Coot also seems to have an issue with not loading the amino acid restraints so when i click real-space refine, i get the error 'unable to find restraints for residue x,y,z'. I feel they may be all related and my first thought is that it has something to do with my Python dependencies however I have no idea how to fix this or reinstall them. Does anyone have an idea if they are all related? Or how i might fix this? fyi I am using - ccp4 program suit v8.0.002 - Coot 0.9.8.3 - Phenix-1.20.1-4487 Thanks in advance. Dale. ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://apc01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.jiscmail.ac.uk%2Fcgi-bin%2FWA-JISC.exe%3FSUBED1%3DCCP4BB%26A%3D1&data=05%7C01%7Cjoel.tyndall%40OTAGO.AC.NZ%7C0016956775a3470c01d908da6f6ab99c%7C0225efc578fe4928b1579ef24809e9ba%7C0%7C0%7C637944801540464507%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000%7C%7C%7C&sdata=gxFjnunql%2FWlWy%2Ff8wrXTK1vlntCgI%2B%2F5isf7n%2FWfmU%3D&reserved=0 This message was issued to members of https://apc01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.jiscmail.ac.uk%2FCCP4BB&data=05%7C01%7Cjoel.tyndall%40OTAGO.AC.NZ%7C0016956775a3470c01d908da6f6ab99c%7C0225efc578fe4928b1579ef24809e9ba%7C0%7C0%7C637944801540464507%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000%7C%7C%7C&sdata=h8rmtdaEf2x0esSWdZ6aZ%2FKAunMwFMqvluJchQBv1H4%3D&reserved=0, a mailing list hosted by https://apc01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.jiscmail.ac.uk%2F&data=05%7C01%7Cjoel.tyndall%40OTAGO.AC.NZ%7C0016956775a3470c01d908da6f6ab99c%7C0225efc578fe4928b1579ef24809e9ba%7C0%7C0%7C637944801540464507%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000%7C%7C%7C&sdata=9u%2FgywNPidWZ8e3osNK%2FCdt5Qp4Lxu3Sb92i8N2kenQ%3D&reserved=0, terms & conditions are available at https://apc01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.jiscmail.ac.uk%2Fpolicyandsecurity%2F&data=05%7C01%7Cjoel.tyndall%40OTAGO.AC.NZ%7C0016956775a3470c01d908da6f6ab99c%7C0225efc578fe4928b1579ef24809e9ba%7C0%7C0%7C637944801540620731%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000%7C%7C%7C&sdata=MHNB1AZEj0KvyzgGtZu43OTdW0pVlixFIoRBGCPX13I%3D&reserved=0 ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
