Hello David, maybe a binary in $CBIN with the same name as a system command? (try, e.g. 'apropos truncate' truncate (1) - shrink or extend the size of a file to the specified size )
there used to be a switch to place $CBIN at the end of the $PATH - maybe this helps? Cheers, Tim On Sun, 25 Sep 2022 14:37:38 +0000 "David J. Schuller" <schul...@cornell.edu> wrote: > CCP4 8.0.004 > Scientific Linux 7, kernel 3.10.0-1160.76.1.el7.x86_64 > mate-desktop-1.16.2-1.el7.x86_64 > > This morning I updated my Nvidia graphics driver, then rebooted. When > I logged in again, my desktop (Mate) was all messed up, no > applications menus, etc. I perused the log files and found many lines > similar to these in /var/log/messages: > > Sep 25 09:45:32 titan mate-session[1718]: WARNING: Could not connect > to Systemd: Failed to connect to socket > /home/jenkins/workspace/CCP4/series-8.0-linux/devtools/install/var/run/dbus/system_bus_socket: > No such file or directorySep 25 09:45:34 titan journal: Error > connecting to system bus: Failed to connect to socket > /home/jenkins/workspace/CCP4/series-8.0-linux/devtools/install/var/run/dbus/system_bus_socket: > No such file or directory Sep 25 10:12:35 titan pulseaudio[22894]: > [alsa-sink-ALC887-VD Analog] core-util.c: Failed to connect to system > bus: Failed to connect to socket > /home/jenkins/workspace/CCP4/series-8.0-linux/devtools/install/var/run/dbus/system_bus_socket: > No such file or directory Sep 25 10:12:40 titan pulseaudio[23162]: > [pulseaudio] core-util.c: Failed to connect to system bus: Failed to > connect to socket > /home/jenkins/workspace/CCP4/series-8.0-linux/devtools/install/var/run/dbus/system_bus_socket: > No such file or directory Sep 25 10:12:40 titan pulseaudio[23162]: > [pulseaudio] core-util.c: Failed to connect to system bus: Failed to > connect to socket > /home/jenkins/workspace/CCP4/series-8.0-linux/devtools/install/var/run/dbus/system_bus_socket: > No such file or directory > > I do not have, and have never had, a user "jenkins" on my system. > Note that the CCP4 workspace is implicated. > > I took the CCP4 startup stuff out of my .cshrc login script and > restarted, and everything appeared to be normal. # source > /usr/local/xtal/ccp4/bin/ccp4.setup-csh >& /dev/null > > Why is jenkins mucking about with my desktop settings, and how do I > keep him from doing so? > > > ======================================================================= > All Things Serve the Beam > ======================================================================= > David J. Schuller > modern man in a post-modern world > MacCHESS, Cornell University > schul...@cornell.edu > > ######################################################################## > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > > This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a > mailing list hosted by www.jiscmail.ac.uk, terms & conditions are > available at https://www.jiscmail.ac.uk/policyandsecurity/ -- -- Tim Gruene Head of the Centre for X-ray Structure Analysis Faculty of Chemistry University of Vienna Phone: +43-1-4277-70202 GPG Key ID = A46BEE1A ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
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