The data resolution is 2A. I have 16 chains in my model out of which only one of the chains has the "missing" domain modeled. Is there a way to do MR to predict where the missing domains will go in the rest of the chains, based on my solved structure?
Thanks for all the helpful suggestions!! M On Wed, Nov 9, 2022 at 3:11 PM Eleanor Dodson < 0000176a9d5ebad7-dmarc-requ...@jiscmail.ac.uk> wrote: > Well you could just try the buccaneer pipeline. It would use the phases > from your solved domain and try to fit the missing sequence. What are your > twin fractions? And what is the resolution? > Eleanor > > On Wed, 9 Nov 2022 at 21:06, Tim Gruene <tim.gru...@univie.ac.at> wrote: > >> Dear Medhanjali DasGupta, >> unless the resolution is really poor, the quickest try would be shelxe, >> starting from what you already have. It might work at, say, 2.8A >> resolution or better... >> >> Best, >> Tim >> >> On Wed, 9 Nov 2022 14:34:28 -0600 Medhanjali >> DasGupta <medhanjalidasgu...@gmail.com> wrote: >> >> > Hello! >> > My protein structure has a missing domain and I am trying to figure >> > out the best way to model this missing domain using the solved >> > (modeled) fixed core domain? My data is also imperfectly twinned, >> > with 4 twin fractions according to refmac5. >> > >> > Any help/ idea is appreciated! >> > >> > >> > >> >> >> >> -- >> -- >> Tim Gruene >> Head of the Centre for X-ray Structure Analysis >> Faculty of Chemistry >> University of Vienna >> >> Phone: +43-1-4277-70202 >> >> GPG Key ID = A46BEE1A >> >> ######################################################################## >> >> To unsubscribe from the CCP4BB list, click the following link: >> https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 >> >> This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a >> mailing list hosted by www.jiscmail.ac.uk, terms & conditions are >> available at https://www.jiscmail.ac.uk/policyandsecurity/ >> > > ------------------------------ > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > -- Thanks, Medhanjali Dasgupta Postdoctoral Research Scientist Lawrence Berkeley National Laboratory ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
