Hi All,
When I use pymol pulgin, I have an issue with pvol.
I try to install pyvol based on instruction shown in here:
https://schlessinger-lab.github.io/pyvol/install.html#:~:text=Download%20the%20basic%20GUI%20installer,PyVOL%20and%20any%20missing%20dependencies.
Following the instuction, pymol reported that the pyvol has been installed.
But when I click pyvol in pulgin, it shows this error msg.( please see below)
I am using windows 10 and pymol version is 2.0+
Could anyone help?
Thank you
Jing
Error msg:
Traceback (most recent call last):
File
"C:\Users\zhanr21\AppData\Local\pymol\lib\site-packages\pmg_tk\startup\pyvol_gui\__init__.py",
line 68, in pyvol_window
refresh_installation_status(form)
File
"C:\Users\zhanr21\AppData\Local\pymol\lib\site-packages\pmg_tk\startup\pyvol_gui\__init__.py",
line 260, in refresh_installation_status
all_pckgs = subprocess.check_output([sys.executable, "-m", "pip", "list",
"--format=json"]).decode('utf-8').strip()
File "C:\Users\zhanr21\AppData\Local\pymol\lib\subprocess.py", line 411, in
check_output
**kwargs).stdout
File "C:\Users\zhanr21\AppData\Local\pymol\lib\subprocess.py", line 512, in
run
output=stdout, stderr=stderr)
subprocess.CalledProcessError: Command
'['C:\\Users\\zhanr21\\AppData\\Local\\pymol\\pythonw.exe', '-m', 'pip',
'list', '--format=json']' returned non-zero exit status 120.
Traceback (most recent call last):
File
"C:\Users\zhanr21\AppData\Local\pymol\lib\site-packages\pmg_tk\startup\pyvol_gui\__init__.py",
line 68, in pyvol_window
refresh_installation_status(form)
File
"C:\Users\zhanr21\AppData\Local\pymol\lib\site-packages\pmg_tk\startup\pyvol_gui\__init__.py",
line 260, in refresh_installation_status
all_pckgs = subprocess.check_output([sys.executable, "-m", "pip", "list",
"--format=json"]).decode('utf-8').strip()
File "C:\Users\zhanr21\AppData\Local\pymol\lib\subprocess.py", line 411, in
check_output
**kwargs).stdout
File "C:\Users\zhanr21\AppData\Local\pymol\lib\subprocess.py", line 512, in
run
output=stdout, stderr=stderr)
subprocess.CalledProcessError: Command
'['C:\\Users\\zhanr21\\AppData\\Local\\pymol\\pythonw.exe', '-m', 'pip',
'list', '--format=json']' returned non-zero exit status 120.
Traceback (most recent call last):
File
"C:\Users\zhanr21\AppData\Local\pymol\lib\site-packages\pmg_tk\startup\pyvol_gui\__init__.py",
line 68, in pyvol_window
refresh_installation_status(form)
File
"C:\Users\zhanr21\AppData\Local\pymol\lib\site-packages\pmg_tk\startup\pyvol_gui\__init__.py",
line 260, in refresh_installation_status
all_pckgs = subprocess.check_output([sys.executable, "-m", "pip", "list",
"--format=json"]).decode('utf-8').strip()
File "C:\Users\zhanr21\AppData\Local\pymol\lib\subprocess.py", line 411, in
check_output
**kwargs).stdout
File "C:\Users\zhanr21\AppData\Local\pymol\lib\subprocess.py", line 512, in
run
output=stdout, stderr=stderr)
subprocess.CalledProcessError: Command
'['C:\\Users\\zhanr21\\AppData\\Local\\pymol\\pythonw.exe', '-m', 'pip',
'list', '--format=json']' returned non-zero exit status 120.
Traceback (most recent call last):
File
"C:\Users\zhanr21\AppData\Local\pymol\lib\site-packages\pmg_tk\startup\pyvol_gui\__init__.py",
line 68, in pyvol_window
refresh_installation_status(form)
File
"C:\Users\zhanr21\AppData\Local\pymol\lib\site-packages\pmg_tk\startup\pyvol_gui\__init__.py",
line 260, in refresh_installation_status
all_pckgs = subprocess.check_output([sys.executable, "-m", "pip", "list",
"--format=json"]).decode('utf-8').strip()
File "C:\Users\zhanr21\AppData\Local\pymol\lib\subprocess.py", line 411, in
check_output
**kwargs).stdout
File "C:\Users\zhanr21\AppData\Local\pymol\lib\subprocess.py", line 512, in
run
output=stdout, stderr=stderr)
subprocess.CalledProcessError: Command
'['C:\\Users\\zhanr21\\AppData\\Local\\pymol\\pythonw.exe', '-m', 'pip',
'list', '--format=json']' returned non-zero exit status 120.
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