Hello Firdous, Probably the problem is that mol A and mol B are two different models. You can't add a bond in Chimera or ChimeraX until after combining them into one model first.
ChimeraX combine command: <https://rbvi.ucsf.edu/chimerax/docs/user/commands/combine.html> ChimeraX bond command or Build Structure tool, Adjust Bonds section: <https://rbvi.ucsf.edu/chimerax/docs/user/commands/bond.html> <https://rbvi.ucsf.edu/chimerax/docs/user/tools/buildstructure.html#bonds> For the best chance of getting an answer to a question about ChimeraX, please use the [email protected] <mailto:[email protected]>address: <https://rbvi.ucsf.edu/chimerax/docs/contact.html> I hope this helps, --Eric Eric Pettersen UCSF Computer Graphics Lab > From: Collaborative Computational Project in Electron cryo-Microscopy > <[email protected] <mailto:[email protected]>> on behalf of Firdous > Tarique <[email protected] <mailto:[email protected]>> > Date: Thursday, November 9, 2023 at 12:27 PM > To: [email protected] <mailto:[email protected]> <[email protected] > <mailto:[email protected]>> > Subject: [ccpem] Making thioester bond in Chimera/ChimeraX > > Hi > > Does anybody know how to make thioester bonds in Chimera or ChimeraX ? > > I am unable to make a bond between Cys321 in mol A with Gly1 in mol B > (S-glycyl-L-cysteine) using Chimera or ChimeraX. > > I tried Isolde in ChimeraX and Build Structure in Chimera to make a bond > between selected atoms but so far have been unsuccessful. I don't know if I > am missing something. > > Any help would be appreciated. > > Thanks > > Firdous > ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
