I am thankful and grateful to everyone for guiding me through. Regards, Thripthi S.
On Mon, Nov 20, 2023 at 1:50 PM Subhomoi Borkotoky <[email protected]> wrote: > Hi, > > Probably you are not setting the grid right. Try the AMDock tool, it uses > Autodock vina. Here you can specify your residues, and the grid will be > prepared accordingly. > > https://github.com/Valdes-Tresanco-MS/AMDock-win > > > > Thanks & Regards, > -------------------------- > *Subhomoi Borkotoky, Ph. D.* > Assistant Professor > Department of Biotechnology, > Invertis University, Bareilly-243123, > UP, India. > > Alternate E-mail: [email protected] > > > https://scholar.google.co.in/citations?hl=en&pli=1&user=bJz7GokAAAAJ > Web of Science Researcher ID: AAC-9193-2021 > <https://publons.com/researcher/AAC-9193-2021/> > > > On Sun, Nov 19, 2023 at 6:05 PM Thripthi Shenoy <[email protected]> > wrote: > >> Greetings to all, >> >> I have performed docking through Glide and Autodock vina for a protein >> for which the active site has been taken from the literature. Glide is able >> to dock the compounds correctly in the active site whereas autodock vina >> does not dock the compounds within the specified site. I have tried docking >> several times in Autodock vina, but not able to obtain proper results. >> I would be grateful to receive any suggestions regarding the same. >> >> Thanking you in advance, >> Thripthi S. >> >> ------------------------------ >> >> To unsubscribe from the CCP4BB list, click the following link: >> https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 >> > ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
