Hi Andre, I recently prepared a Consurf-like figure using conservation scores pulled from alignments in JalView. You would follow instructions for running data2bfactor.py in PyMOL, feeding the conservation scores to replace your model's B factor column. Then set up a color ramp like you would use to display B factors. Please let me know if you go this route and run into issues.
Here is a link to a copy of data2bfactor.py: https://gist.github.com/Croydon-Brixton/ca916769c285faed69740d384b5daf23 Best, Andrew On Thu, Jan 4, 2024, 9:07 AM Andre Godoy < [email protected]> wrote: > Dear CCP4ers, > > Wishing you all a Happy New Year! > > You may have noticed that the Consurf server has been down since the > conflicts in the Middle East began. Does anyone know of alternative tools > that can provide similar results? > > Best regards. > > > Andre S. Godoy, PhD > > Universidade de São Paulo > Instituto de Física de São Carlos > Av. João Dagnone, 1100, Jd. Santa Angelina > 13563-120 - São Carlos, SP, Brazil > > ------------------------------ > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
