Hello Jan, you can convert your cryo-EM problem into crystallographic one by FT'ing your map into a set of structure factors "Fobs" and then giving the atomic model and MTZ with these "Fobs" to CheckMyBlob. If it's cool enough, it should not make much difference if your "Fobs" come from X-ray or cryo-EM! Please share your experience if you choose to give it a try. Good luck! Pavel
P.S.: Phenix way to convert map to structure factors (example): phenix.map_to_structure_factors map.mrc d_min=2.3 On Fri, Jan 26, 2024 at 10:27 AM Jan van Agthoven <[email protected]> wrote: > Dear all, > > We’re working on an unknown ligand density in our CryoEM structure. Is > there a program that uses deep-learning to fill uncharacterized electron > density similar to Checkmyblob but for CryoEM maps? > > Thanks, > > Jan > > ######################################################################## > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > > This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a > mailing list hosted by www.jiscmail.ac.uk, terms & conditions are > available at https://www.jiscmail.ac.uk/policyandsecurity/ > ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
