Thanks, David!
That did the trick.
The script still finds a missing library (libjvm.so) in what appears to
be Java Runtime Environment, but now CCP4I2 works, and probably also the
Update feature on CCP4I.
Best regards,
Pedro
On 30/01/2024 14:48, David J. Schuller wrote:
Similar messages appear on the Known Issues page:
https://www.ccp4.ac.uk/download/doc/known_issues_linux.html
"Download find-missing-libs.sh
<https://www.ccp4.ac.uk/download/doc/find-missing-libs.sh> and run it
as a normal user (not root). The script will advise on what to do next."
=======================================================================
All Things Serve the Beam
=======================================================================
David J. Schuller
modern man in a post-modern world
MacCHESS, Cornell University
[email protected]
------------------------------------------------------------------------
*From:* CCP4 bulletin board <[email protected]> on behalf of Pedro
Matias <[email protected]>
*Sent:* Tuesday, January 30, 2024 9:17 AM
*To:* [email protected] <[email protected]>
*Subject:* Re: [ccp4bb] Problem running CCP4I2 in CCP4 8
Hi Arnaud,
I have installed Fedora 38 from scratch and reinstalled CCP4 since the
previous FC version was too old to update. I will try again after the
next reboot.
Thanks,
Pedro
On 30/01/2024 13:44, Arnaud Basle wrote:
> Hi Pedro,
>
> Can you reboot your machine and try again?
>
> I have see this error before on linux mint/ubuntu. Did you also updated
> the OS?
>
> Cheers,
> Arnaud
>
>
> On 30/01/2024 11:43, Pedro Matias wrote:
>> ⚠ External sender. Take care when opening links or attachments. Do not
>> provide your login details.
>>
>> Dear All,
>>
>> After updating CCP4 to version 8, CCP4I2 stopped working with the
>> following error message:
>>
>>> Running CCP4i2 browser from:
>>> /home/pxsoft/ccp4/ccp4-8.0/lib/python3.7/site-packages/ccp4i2
>>> Python 3.7.12 (default, Jan 6 2022, 21:30:12)
>>> [GCC 8.2.1 20180905 (Red Hat 8.2.1-3)]
>>> Qt version 5.15.2
>>>
>>> qt.qpa.plugin: Could not load the Qt platform plugin "xcb" in
>>> "/home/pxsoft/ccp4/ccp4-8.0/QtPlugins/" even though it was found.
>>> This application failed to start because no Qt platform plugin could
>>> be initialized. Reinstalling the application may fix this problem.
>>>
>>> Available platform plugins are: eglfs, linuxfb, minimal, minimalegl,
>>> offscreen, vnc, webgl, xcb.
>>>
>>> Abort (core dumped)
>> Apparently I am missing some library/package but I have no idea of
which.
>>
>> Thanks & BR,
>>
>> Pedro
>>
>> --
>> Industry and Medicine Applied Crystallography
>> Macromolecular Crystallography Unit
>> ___________________________________
>> Phones : (351-21) 446-9100 Ext. 1669
>> (351-21) 446-9669 (direct)
>> Fax : (351-21) 441-1277 or 443-3644
>>
>> email : [email protected]
>>
>>
https://nam12.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.itqb.unl.pt%2Fresearch%2Fbiological-chemistry%2Findustry-and-medicine-applied-crystallography&data=05%7C02%7Cschuller%40CORNELL.EDU%7C7f66bb288389491fff2708dc219e486c%7C5d7e43661b9b45cf8e79b14b27df46e1%7C0%7C0%7C638422211033290359%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=ncoQvCe7uIZHrS4zwOGoyNMB5JCLrh78opYomjQzGqs%3D&reserved=0
<http://www.itqb.unl.pt/research/biological-chemistry/industry-and-medicine-applied-crystallography>
>>
>>
https://nam12.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.itqb.unl.pt%2Flabs%2Fmacromolecular-crystallography-unit&data=05%7C02%7Cschuller%40CORNELL.EDU%7C7f66bb288389491fff2708dc219e486c%7C5d7e43661b9b45cf8e79b14b27df46e1%7C0%7C0%7C638422211033298109%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=POb5gNKM12eJP6YY6Noq4zQpGRs4CkKkUzmzZYOcMMg%3D&reserved=0
<http://www.itqb.unl.pt/labs/macromolecular-crystallography-unit>
>>
>>
>> Mailing address :
>> Instituto de Tecnologia Quimica e Biologica António Xavier
>> Universidade Nova de Lisboa
>> Av. da República
>> 2780-157 Oeiras
>> PORTUGAL
>>
>> ITQB NOVA, a great choice for your PhD
>>
https://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fyoutu.be%2Fde6j-aaTWNQ&data=05%7C02%7Cschuller%40CORNELL.EDU%7C7f66bb288389491fff2708dc219e486c%7C5d7e43661b9b45cf8e79b14b27df46e1%7C0%7C0%7C638422211033303516%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=IICjRQeYwqHmUqOtvC5V0q8COepe0G9Fs%2BWQ4oxCVKg%3D&reserved=0
<https://youtu.be/de6j-aaTWNQ>
>>
>>
>> Master Programme in Biochemistry for Health
>>
https://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fyoutu.be%2FUKstDCFjYI8&data=05%7C02%7Cschuller%40CORNELL.EDU%7C7f66bb288389491fff2708dc219e486c%7C5d7e43661b9b45cf8e79b14b27df46e1%7C0%7C0%7C638422211033307438%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=PwblBocr1nEbYJ9VRUjz%2BjDgEyO4DVHSHrc6iFYwzHQ%3D&reserved=0
<https://youtu.be/UKstDCFjYI8>
>>
>>
>>
########################################################################
>>
>> To unsubscribe from the CCP4BB list, click the following link:
>>
https://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.jiscmail.ac.uk%2Fcgi-bin%2FWA-JISC.exe%3FSUBED1%3DCCP4BB%26A%3D1&data=05%7C02%7Cschuller%40CORNELL.EDU%7C7f66bb288389491fff2708dc219e486c%7C5d7e43661b9b45cf8e79b14b27df46e1%7C0%7C0%7C638422211033311252%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=UOkiR0olhzxoyEMqFpe7CZsPHNGdfoUvuUgecfywiUY%3D&reserved=0
<https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1>
>>
>>
>> This message was issued to members of
>>
https://nam12.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.jiscmail.ac.uk%2FCCP4BB&data=05%7C02%7Cschuller%40CORNELL.EDU%7C7f66bb288389491fff2708dc219e486c%7C5d7e43661b9b45cf8e79b14b27df46e1%7C0%7C0%7C638422211033315404%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=2LxeJr7Pz4ob1WVJ48cauiJK1vAnBvdd9c46CGhI0A4%3D&reserved=0
<http://www.jiscmail.ac.uk/CCP4BB>,
>> a mailing list hosted by
>>
https://nam12.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.jiscmail.ac.uk%2F&data=05%7C02%7Cschuller%40CORNELL.EDU%7C7f66bb288389491fff2708dc219e486c%7C5d7e43661b9b45cf8e79b14b27df46e1%7C0%7C0%7C638422211033319754%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=bEQELWcAXMuivMwVMhl8dyx%2FkJ3eYk056lm9Wv0lAWc%3D&reserved=0
<http://www.jiscmail.ac.uk/>,
>> terms & conditions are available at
>>
https://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.jiscmail.ac.uk%2Fpolicyandsecurity%2F&data=05%7C02%7Cschuller%40CORNELL.EDU%7C7f66bb288389491fff2708dc219e486c%7C5d7e43661b9b45cf8e79b14b27df46e1%7C0%7C0%7C638422211033324025%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=dVoyu9ptKImEFY3E5DKA4eHOWYyM90mvW7t599ZUi%2FY%3D&reserved=0
<https://www.jiscmail.ac.uk/policyandsecurity/>
>
>
> ########################################################################
>
> To unsubscribe from the CCP4BB list, click the following link:
>
https://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.jiscmail.ac.uk%2Fcgi-bin%2FWA-JISC.exe%3FSUBED1%3DCCP4BB%26A%3D1&data=05%7C02%7Cschuller%40CORNELL.EDU%7C7f66bb288389491fff2708dc219e486c%7C5d7e43661b9b45cf8e79b14b27df46e1%7C0%7C0%7C638422211033328049%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=FBVIahieGeiiEu8JfvnJYS6wYQmCZDeWgKGywedueC0%3D&reserved=0
<https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1>
>
> This message was issued to members of
https://nam12.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.jiscmail.ac.uk%2FCCP4BB&data=05%7C02%7Cschuller%40CORNELL.EDU%7C7f66bb288389491fff2708dc219e486c%7C5d7e43661b9b45cf8e79b14b27df46e1%7C0%7C0%7C638422211033331881%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=CAqkVYWXVMUS4sQnkEvGyuqge5QfCX9%2FiAddWzbDMzE%3D&reserved=0
<http://www.jiscmail.ac.uk/CCP4BB>, a mailing list hosted by
https://nam12.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.jiscmail.ac.uk%2F&data=05%7C02%7Cschuller%40CORNELL.EDU%7C7f66bb288389491fff2708dc219e486c%7C5d7e43661b9b45cf8e79b14b27df46e1%7C0%7C0%7C638422211033335737%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=lFLTQJSpL56oMsNy6ydV3yCFs9MT%2BQTJEQXtdx26meo%3D&reserved=0
<http://www.jiscmail.ac.uk/>, terms & conditions are available at
https://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.jiscmail.ac.uk%2Fpolicyandsecurity%2F&data=05%7C02%7Cschuller%40CORNELL.EDU%7C7f66bb288389491fff2708dc219e486c%7C5d7e43661b9b45cf8e79b14b27df46e1%7C0%7C0%7C638422211033339357%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=T%2FugA2oig4dTDV8OlCi5o5zXSQ8fKRH4muMgvPPsYNU%3D&reserved=0
<https://www.jiscmail.ac.uk/policyandsecurity/>
--
Industry and Medicine Applied Crystallography
Macromolecular Crystallography Unit
___________________________________
Phones : (351-21) 446-9100 Ext. 1669
(351-21) 446-9669 (direct)
Fax : (351-21) 441-1277 or 443-3644
email : [email protected]
https://nam12.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.itqb.unl.pt%2Fresearch%2Fbiological-chemistry%2Findustry-and-medicine-applied-crystallography&data=05%7C02%7Cschuller%40CORNELL.EDU%7C7f66bb288389491fff2708dc219e486c%7C5d7e43661b9b45cf8e79b14b27df46e1%7C0%7C0%7C638422211033343826%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=5Sf6HcqwXNBIujw83w%2B5fELnq6vlQ8NuHOrdW8skPUk%3D&reserved=0
<http://www.itqb.unl.pt/research/biological-chemistry/industry-and-medicine-applied-crystallography>
https://nam12.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.itqb.unl.pt%2Flabs%2Fmacromolecular-crystallography-unit&data=05%7C02%7Cschuller%40CORNELL.EDU%7C7f66bb288389491fff2708dc219e486c%7C5d7e43661b9b45cf8e79b14b27df46e1%7C0%7C0%7C638422211033347853%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=7mtjz8f6FoVMu7uoMml76l6xue7dU7h0pr5TIvzViCQ%3D&reserved=0
<http://www.itqb.unl.pt/labs/macromolecular-crystallography-unit>
Mailing address :
Instituto de Tecnologia Quimica e Biologica António Xavier
Universidade Nova de Lisboa
Av. da República
2780-157 Oeiras
PORTUGAL
ITQB NOVA, a great choice for your PhD
https://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fyoutu.be%2Fde6j-aaTWNQ&data=05%7C02%7Cschuller%40CORNELL.EDU%7C7f66bb288389491fff2708dc219e486c%7C5d7e43661b9b45cf8e79b14b27df46e1%7C0%7C0%7C638422211033351600%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=m%2Bt1uqQFeNoo9UMpJ6KlEOKvcPts0OEF2%2FgTpW9Titc%3D&reserved=0
<https://youtu.be/de6j-aaTWNQ>
Master Programme in Biochemistry for Health
https://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fyoutu.be%2FUKstDCFjYI8&data=05%7C02%7Cschuller%40CORNELL.EDU%7C7f66bb288389491fff2708dc219e486c%7C5d7e43661b9b45cf8e79b14b27df46e1%7C0%7C0%7C638422211033355291%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=IX%2FjNboiKZ1ICGTTIxhygeUpwtFU6TCJ%2B63RFfNdkiA%3D&reserved=0
<https://youtu.be/UKstDCFjYI8>
########################################################################
To unsubscribe from the CCP4BB list, click the following link:
https://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.jiscmail.ac.uk%2Fcgi-bin%2FWA-JISC.exe%3FSUBED1%3DCCP4BB%26A%3D1&data=05%7C02%7Cschuller%40CORNELL.EDU%7C7f66bb288389491fff2708dc219e486c%7C5d7e43661b9b45cf8e79b14b27df46e1%7C0%7C0%7C638422211033358946%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=tLMEcMWo%2BJOdUr2Q%2BpQgZOsUXQ96fqGq4J1q%2Bjx%2FvPY%3D&reserved=0
<https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1>
This message was issued to members of
https://nam12.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.jiscmail.ac.uk%2FCCP4BB&data=05%7C02%7Cschuller%40CORNELL.EDU%7C7f66bb288389491fff2708dc219e486c%7C5d7e43661b9b45cf8e79b14b27df46e1%7C0%7C0%7C638422211033362658%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=grAnN4Q94PxgHecJ%2B5O%2BDN6qYTnT4boaepBt8vld1tg%3D&reserved=0
<http://www.jiscmail.ac.uk/CCP4BB>, a mailing list hosted by
https://nam12.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.jiscmail.ac.uk%2F&data=05%7C02%7Cschuller%40CORNELL.EDU%7C7f66bb288389491fff2708dc219e486c%7C5d7e43661b9b45cf8e79b14b27df46e1%7C0%7C0%7C638422211033366129%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=ERCe6uuUT1FmqVF0XsZWrtQ%2B3Pkv91WN%2Bk%2F1oNLZK9k%3D&reserved=0
<http://www.jiscmail.ac.uk/>, terms & conditions are available at
https://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.jiscmail.ac.uk%2Fpolicyandsecurity%2F&data=05%7C02%7Cschuller%40CORNELL.EDU%7C7f66bb288389491fff2708dc219e486c%7C5d7e43661b9b45cf8e79b14b27df46e1%7C0%7C0%7C638422211033369757%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=mYpncoDh3KSv6Q5dX3D3z8Lsvkn5qxDow77PTLw4%2BJQ%3D&reserved=0
<https://www.jiscmail.ac.uk/policyandsecurity/>
------------------------------------------------------------------------
To unsubscribe from the CCP4BB list, click the following link:
https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1
<https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1>
--
Industry and Medicine Applied Crystallography
Macromolecular Crystallography Unit
___________________________________
Phones : (351-21) 446-9100 Ext. 1669
(351-21) 446-9669 (direct)
Fax : (351-21) 441-1277 or 443-3644
email :[email protected]
http://www.itqb.unl.pt/research/biological-chemistry/industry-and-medicine-applied-crystallography
http://www.itqb.unl.pt/labs/macromolecular-crystallography-unit
Mailing address :
Instituto de Tecnologia Quimica e Biologica António Xavier
Universidade Nova de Lisboa
Av. da República
2780-157 Oeiras
PORTUGAL
ITQB NOVA, a great choice for your PhD
https://youtu.be/de6j-aaTWNQ
Master Programme in Biochemistry for Health
https://youtu.be/UKstDCFjYI8
########################################################################
To unsubscribe from the CCP4BB list, click the following link:
https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1
This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list
hosted by www.jiscmail.ac.uk, terms & conditions are available at
https://www.jiscmail.ac.uk/policyandsecurity/