Dear all,
A new paper describes how therecently-announced NextGen Archive
<https://www.wwpdb.org/news/news?year=2023#63cedad9b5f08ee94ab73826>provides
centralized access to integrated annotations and enriched structural
information for PDB data:
*NextGen Archive: Centralising Access to Integrated Annotations and
Enriched Structural Information by the Worldwide Protein Data Bank*
Preeti Choudhary, Zukang Feng, John Berrisford, Henry Chao, Yasuyo
Ikegawa, Ezra Peisach, Dennis W. Piehl, James Smith, Ahsan Tanweer,
Mihaly Varadi, John D. Westbrook, Jasmine Y. Young, Ardan
Patwardhan, Kyle L. Morris, Jeffrey C. Hoch, Genji Kurisu, Sameer
Velankar, Stephen K. Burley
(2023)/bioRxiv/doi:10.1101/2023.10.24.563739
<https://doi.org/10.1101/2023.10.24.563739>
ThePDB NextGen archive
<https://www.wwpdb.org/ftp/pdb-nextgen-archive-site>provides sequence
annotation from external resources such as UniProt, SCOP2 and Pfam in
addition to the content provided in the structure model files in the PDB
main archive. The inclusion of UniProtKB numbering facilitates
effortless structural comparisons between experimental and predicted
protein models. These PDBx/mmCIF files are directly compatible with
various data visualization tools, simplifying the display of annotations
on 3D structure views.
Read this news online:
https://www.wwpdb.org/news/news?year=2024#65b3f0e0c76ca3abcc925d12
Kind regards,
Deborah Harrus, on behalf of the wwPDB
--
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Deborah Harrus, Ph.D.
PDBe Archive Project Leader, Biocuration Lead
PDBe - Protein Data Bank in Europe
European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Hinxton
Cambridge CB10 1SD UK
http://www.PDBe.org
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