Dear all,
A workshop was held at EMBL-EBI (Hinxton, UK) in January 2020 to discuss
data requirements for deposition and validation of cryoEM structures,
with a focus on single-particle analysis and setting community
recommendations.
The outcomes of this meeting have now been published in this manuscript
which highlights the recent achievements made by the wwPDB in the space
of 3DEM validation and the community recommendations going forward.
Some of these recommendations have already been implemented, such as a
three-tiered strategy powered by the Validation Analysis (VA) pipeline
for the dissemination of validation information and ensuring the that VA
can be run by external applications.
*Community recommendations on cryoEM data archiving and validation*
Gerard J. Kleywegt, Paul D. Adams, Sarah J. Butcher, Cathy Lawson,
Alexis Rohou, Peter B. Rosenthal, Sriram Subramaniam, Maya Topf,
Sanja Abbott, Philip R. Baldwin, John M. Berrisford, Gérard
Bricogne, Preeti Choudhary, Tristan I. Croll, Radostin Danev, Sai J.
Ganesan, Timothy Grant, Aleksandras Gutmanas, Richard Henderson, J.
Bernard Heymann, Juha T. Huiskonen, Andrei Istrate, Takayuki Kato,
Gabriel C. Lander, Shee-Mei Lok, Steven J. Ludtke, Garib N.
Murshudov, Ryan Pye, Grigore D. Pintilie, Jane S. Richardson,
Carsten Sachse, Osman Salih, Sjors H.W. Scheres, Gunnar F.
Schroeder, Carlos Oscar S. Sorzano, Scott M. Stagg, Zhe Wang,
Rangana Warshamanage, John D. Westbrook, Martyn D. Winn, Jasmine Y.
Young, Stephen K. Burley, Jeffrey C. Hoch, Genji Kurisu, Kyle
Morris, Ardan Patwardhan, Sameer Velankar
(2024)/IUCrJ/11: 140–151https://doi.org/10.1107/S2052252524001246
Kind regards,
Deborah Harrus
on behalf of the wwPDB
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Deborah Harrus, Ph.D.
PDBe Archive Project Leader, Biocuration Lead
PDBe - Protein Data Bank in Europe
European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Hinxton
Cambridge CB10 1SD UK
http://www.PDBe.org
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