It would be interesting (to me anyway) if you could run mapdump and post *just* the header info.
Best wishes, Jon Cooper. [email protected] Sent from Proton Mail Android -------- Original Message -------- On 22/07/2024 19:28, Aline Dias da Purificação <[email protected]> wrote: > Hi everyone, > > I’m having trouble aligning a map generated by PanDDA (event map) with its > corresponding PDB file in PyMOL. The map is in `native.ccp4` format and it > loads correctly in Coot, aligning perfectly with the PDB. However, when I > load the same files in PyMOL, the map appears misaligned with the structure. > > > > ### What I've Tried: > 1. **Loading in Coot:** The map and PDB align correctly in Coot. > 2. **Using `phenix.map_box`:** > ```bash > phenix.map_box map_file=Entry-A12A-event_1_1-BDC_0.24_map.native.ccp4 > pdb_file=Entry-A12A.pdb > ``` > This generates a new map, but it still appears misaligned in PyMOL. > > > Has anyone faced similar issues with PanDDA maps in PyMOL? Any suggestions > for ensuring the map aligns correctly in PyMOL? > > Any help or suggestions would be greatly appreciated, as I need charming > figures for publication. > > Thank you a lot! > > ######################################################################## > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > > This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing > list hosted by www.jiscmail.ac.uk, terms & conditions are available at > https://www.jiscmail.ac.uk/policyandsecurity/ > ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
