Dear all,
Since yesterday I’m having some issues for running of ccp4i2. At the begging I
though it was a disk space memory problem but it wasn´t. I have re-install ccp4
(indeed, I have tried with ccp4-8 and ccp4-9 installations) with the same
result. I can run all other programs (ccp4, ccp4cloud…) but ccp4i2.
My machine is Ubuntu 22.04.4 and I have the error messages shown below when
trying to execute ccp4i2.
Any help will be really appreciate
Best,
Marian
Running CCP4i2 browser from: /opt/xtal/ccp4-9/lib/python3.9/site-packages/ccp4i2
Python 3.9.18 (main, Feb 15 2024, 15:40:47)
[GCC 9.3.1 20200408 (Red Hat 9.3.1-2)]
Qt version 5.15.3
ccp4i2 version 1.1.0
ccp4i2 source revision 6539
CPrintHandler saving print output to directory:
/home/msa/.CCP4I2/logs/started_1721818556
None
None
Starting Project Manager
Current schema version: ('0.1.22', '23-09-2016')
CCP4i2 opening database file /home/msa/.CCP4I2/db/database.sqlite
updateDbSchema 0.1.22 23-09-2016
Starting Project Manager - DONE
Starting Job Controller
Starting Job Controller - DONE
Rebuilding DATABASE.db.xml for project /home/msa/CCP4I2_PROJECTS/TRT35C51
exportProjectXml a25752da1bc311ee8776afbed6b8f83a
/home/msa/CCP4I2_PROJECTS/TRT35C51/DATABASE.db.xml
Rebuilding DATABASE.db.xml for project /home/msa/CCP4I2_PROJECTS/TRT84A11B
exportProjectXml 15ec8f74f27611eea3f08fdd9b93c48d
/home/msa/CCP4I2_PROJECTS/TRT84A11B/DATABASE.db.xml
Rebuilding DATABASE.db.xml for project /home/msa/CCP4I2_PROJECTS/TRT84A11C
exportProjectXml 3c81ce1af31611eea3f08fdd9b93c48d
/home/msa/CCP4I2_PROJECTS/TRT84A11C/DATABASE.db.xml
Traceback (most recent call last):
File "/opt/xtal/ccp4-9/lib/python3.9/site-packages/ccp4i2/bin/browser.py",
line 109, in <module>
startBrowser(sys.argv[1:], app=app, splash=splash)
File "/opt/xtal/ccp4-9/lib/python3.9/site-packages/ccp4i2/utils/startup.py",
line 248, in startBrowser
createMissingDATABASEdbXML()
File "/opt/xtal/ccp4-9/lib/python3.9/site-packages/ccp4i2/utils/startup.py",
line 177, in createMissingDATABASEdbXML
tree = parse_from_unicode(s)
File "/opt/xtal/ccp4-9/lib/python3.9/site-packages/ccp4i2/utils/startup.py",
line 173, in parse_from_unicode
return etree.fromstring(s, parser=utf8_parser)
File "src/lxml/etree.pyx", line 3222, in lxml.etree.fromstring
File "src/lxml/parser.pxi", line 1877, in lxml.etree._parseMemoryDocument
File "src/lxml/parser.pxi", line 1765, in lxml.etree._parseDoc
File "src/lxml/parser.pxi", line 1127, in lxml.etree._BaseParser._parseDoc
File "src/lxml/parser.pxi", line 601, in
lxml.etree._ParserContext._handleParseResultDoc
File "src/lxml/parser.pxi", line 711, in lxml.etree._handleParseResult
File "src/lxml/parser.pxi", line 640, in lxml.etree._raiseParseError
File "<string>", line 1
lxml.etree.XMLSyntaxError: Document is empty, line 1, column 1
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