Hi Paul,
so there is not  way how to generate cif file when we have precise
ideal structure (given from quantum chemistry calculations)?

Also two off topic questions regarding coot-1 and coot. I tried to
transfer some of my keybindings and settings to coot-1 "language".
However as I understand not all things are supported. Like adding a
icon  for example of "split-water" into the main icon menu... 

And to old coot... is it possible to add keybinding for "tandem
refine"? I find it very useful.

Thanks a lot,
Petr

Paul Emsley píše v Čt 15. 08. 2024 v 16:13 +0100:
> On 8/15/24 09:01, Andrea Smith wrote:
> > 
> > --
> > 
> > Dear all,
> > 
> Dear Andrea,
> > 
> > I successfully used libcheck to generate libraries for my ligands a
> > couple of months ago. Now I wanted to use it again and it is giving
> > me 
> > an error. Moreover, even though I select COOR Y and LCOOR N,
> > libcheck 
> > uses COOR N and LCOOR Y.
> > 
> That is chemistry-perception mode, it seems to me (it's been a while 
> since I've used it).
> > 
> > Can someone tell me what am I doing wrong?
> > 
> You are doing nothing wrong. You have a big molecule.
> > 
> > I attach a prinscreen from my terminal window. I am using Linux 
> > Ubuntu, Libcheck vers 5.2.02 (which I used successfully
> > previously).
> > 
> Fascinating. Libcheck is telling you to edit the Fortran code and 
> recompile it. But who's up for that?
> 
> The alternative is to use Acedrg.
> 
> However, the current version of Acedrg doesn't do chemistry
> perception - 
> so you will have to draw the molecule out in 2D (or by some other
> means 
> determine the SMILES string).
> 
> Paul.
> 
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